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Ali R, Kuriqi A, Abubaker S, Kisi O (2019). Long-term trends and seasonality detection of the observed flow in Yangtze River using Mann-Kendall and Sen’s innovative trend method. Water 11(9), 1855. https://doi.org/10.3390/w11091855
Alizamir M, Kisi O, Muhammad Adnan R, Kuriqi A (2020). Modelling reference evapotranspiration by combining neuro-fuzzy and evolutionary strategies. Acta Geophysica 68: 1113-1126. https://doi.org/10.1007/s11600-020-00446-9
Amaral SD, Branco P, Romão F, Ferreira MT, Pinheiro AN, Santos JM (2021) Evaluation of low-head ramped weirs for a potamodromous cyprinid: effects of substrate addition and discharge on fish passage performance, stress and fatigue. Water 13, 765. https://doi.org/10.3390/w13060765
Amaral SD, Quaresma AL, Branco P, Romão F, Katopodis C, Ferreira MT, Pinheiro AN, Santos JM (2019) Assessment of retrofitted ramped weirs to improve passage of potamodromous fish. Water 11, 2441. https://doi.org/10.3390/w11122441
Amaral SD, Branco P, Katopodis C, Ferreira MT, Pinheiro AN, Santos JM (2019) Passage performance of potamodromous cyprinids over an experimental low-head ramped weir: the effect of ramp length and slope. Sustainability 11, 1456. https://doi.org/10.3390/su11051456
Amaral SD, Branco P, Romão F, Viseu T, Ferreira MT, Pinheiro AN, Santos JM (2018) The effect of weir crest width and discharge on passage performance of a potamodromous cyprinid. Marine and Freshwater Research 69:1795–1804.
Amaral SD, Branco P, Katopodis C, Ferreira MT, Pinheiro AN, Santos JM (2018) To swim or to jump? Passage behaviour of a potamodromous cyprinid over an experimental broad-crested weir. River Research and Applications 34:174–182. https://doi.org/10.1002/rra.3232
Adnan RM, Liang Z, Kuriqi A, Kisi O, Malik A, Li B, Mortazavizadeh F (2020). Air temperature prediction using different machine learning models. Indonesian Journal of Electrical Engineering and Computer Science 22:534-541.
Adnan RM, Chen Z, Yuan X, Kisi O, El-Shafie A, Kuriqi A, Ikram M (2020). Reference evapotranspiration modeling using new heuristic methods. Entropy 22(5), 547. https://doi.org/10.3390/e22050547
Ardıçlıoğlu M, Kuriqi A (2019). Calibration of channel roughness in intermittent rivers using HEC-RAS model: Case of Sarimsakli Creek, Turkey. SN Applied Sciences 1(9), 1080. https://doi.org/10.1007/s42452-019-1141-9
Bajirao TS, Kumar P, Kumar M, Elbeltagi A, Kuriqi A (2021). Superiority of hybrid soft computing models in daily suspended sediment estimation in highly dynamic rivers. Sustainability 13(2), 542. https://doi.org/10.3390/su13020542
Baladrón A, Costa MJ, Bejarano MD, Pinheiro A, Boavida I (2021) Can vegetation provide shelter to cyprinid species under hydropeaking? Science of the Total Environment 769, 145339. doi: 10.1016/j.scitotenv.2021.145339
Baladrón A, Bejarano MD, Sarneel J, Boavida I (in review) Plants under hydropeaking: morphological and physiological responses. Journal of Applied Ecology
Branco P, Amaral SD, Ferreira MT, Santos JM (2017) Do small barriers affect the movement of freshwater fish by increasing residency? Science of the Total Environment 581-582:486-494.
Amaral SD, Branco P, Silva AT, Katopodis C, Viseu T, Ferreira MT, Pinheiro AN, Santos JM (2016) Upstream passage of potamodromous cyprinids over small weirs: the influence of key-hydraulic parameters. Journal of Ecohydraulics 1:79–89. http://dx.doi.org/10.1080/24705357.2016.1237265
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Branco P, Santos JM, Amaral S, Romão F, Pinheiro AN, Ferreira MT (2016) Potamodromous fish movements under multiple stressors: Connectivity reduction and oxygen depletion. Science of the Total Environment 572:520-525.
Calapez AR, Branco P, Santos JM, Ferreira MT, Hein T, Brito AG, Feio MG (2017) Macroinvertebrate short-term responses to flow variation and oxygen depletion: A mesocosm approach. Science of the Total Environment 599-600:1202–1212.
Calapez AR, Elias CL, Almeida SFP, Brito AG, Feio MJ (in press) Sewage contamination under water scarcity effects on stream biota: biofilm, grazers and their interaction. Environmental Science and Pollution Research.
Calapez AR, Elias CL, Alves A, Almeida SFP, Brito AG, Feio MJ (in press) Stream biofilm communities’ shifts induced by flow stagnation, sewage contamination and grazing. Hydrobiologia.
Carlos C, Gonçalves F, Crespo L, Zina V, Oliveira I, Crespí A, Torres L (2019) How does habitat diversity affect ground- dwelling arthropods assemblages in Douro Demarcated Region terraced vineyards? Journal of Insect Conservation 23:555–564.
Cortes RMV, Peredo A, Terêncio DPS, Fernandes LFS, Moura JP, Jesus JJB, Magalhães MPM, Ferreira PJS, Pacheco FAL (2019) Undamming the Douro River catchment: A stepwise approach for prioritizing dam removal. Water 11(4):693 doi: 10.3390/w11040693
Costa MJ, Boavida I, Almeida V, Cooke SJ, Pinheiro AN (2018) Do artificial velocity refuges mitigate the physiological and behavioral consequences of hydropeaking on a freshwater Iberian cyprinid? Ecohydrology https://doi.org/10.1002/eco.1983
Costa MJ, Ferreira MT, Pinheiro AN, Boavida I (2019) The potential of lateral refuges for Iberian barbel under simulated hydropeaking conditions. Ecological Engineering 127:567-578.
Costa MJ, Fuentes-Pérez JF, Boavida I, Tuhtan JA, Pinheiro AN (2019) Fish under pressure: examining behavioural responses of Iberian Barbel under simulated hydropeaking with instream structures. PLoS ONE 14(1):e0211115. https://doi.org/10.1371/journal.pone.0211115
Costa MJ, Lennox RJ, Katopodis C, Cooke SJ (2017) Is there evidence for flow variability as an organism‐level stressor in fluvial fish? Journal of Ecohydraulics 2: 68–83.
Díaz-Redondo M, Cortés FM, Molina B, Álvarez-Rodríguez J (2021) Assessing multi-temporal river-floodplain dynamics as baseline for process-oriented restoration in a large river: the Duero River, Spain. Restoration Ecology http://dx.doi.org/10.1111/rec.13434
Diaz‐Redondo M, Egger G, Marchamalo M, Damm C, Proença de Oliveira R, Schmitt L (2018) Targeting lateral connectivity and morphodynamics in a large river-floodplain system: the Upper Rhine River. River Research and Applications 34:734-744. https://doi.org/10.1002/rra.3287
Diaz‐Redondo M, Egger G, Marchamalo M, Hohensinner S, Dister E (2017) Benchmarking fluvial dynamics for process‐based river restoration: the Upper Rhine River (1816–2014). River Research and Applications 33:403-414. https://doi.org/10.1002/rra.3077
Diaz‐Redondo M, Marchamalo M, Egger G, Magdaleno M (2018) Toward floodplain rejuvenation in the middle Ebro River (Spain): From history to action. Geomorphology 317: 117–127 https://doi.org/10.1016/j.geomorph.2018.05.014
Duarte G, Moreira M, Branco P, da Costa L, Ferreira MT, Segurado P (2018) One millennium of historical freshwater fish occurrence data for Portuguese rivers and streams. Scientific Data 5:180163. DOI: 10.1038/sdata.2018.163.
Duarte G, Segurado P, Oliveira T, Haidvogl G, Pont D, Ferreira MT, Branco P (in press) The river network toolkit – RivTool.
Elbeltagi A, Kumari N, Dharpure JK, Mokhtar A, Alsafadi K, Kumar M, Mehdinejadiani B, Etedali HR, Brouziyne Y, Islam ARMT, Kuriqi A (2021). Prediction of combined terrestrial evapotranspiration index (CTEI) over large river basin based on machine learning approaches. Water 13(4), 547. https://doi.org/10.3390/w13040547
Englmaier GK, Hayes DS, Meulenbroek P, Terefe Y, Lakew A, Tesfaye G, Waidbacher H, Malicky H, Wubie A, Leitner P, Graf W (2020) Longitudinal river zonation in the tropics: Examples of fish and caddisflies from the endorheic Awash River, Ethiopia. Hydrobiologia 847: 4063-4090. doi: 10.1007/s10750-020-04400-0
Feio MJ, Filipe AF, Almeida SFP, Múria C, Väisänen LOS, Duarte S, Fais M, Costa F, Sáinz M, Barquín J, Vieites D, Cordeiro R, Fonseca A, Gonçalves V, Diaz-de-Quijano D, Ivanova EA, Kolmakova OV, Trusova MY, Calapez AR et al. (in press) The use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems – recent advances Limnetica.
Fonseca A, Ugille J-P, Michez A, Rodríguez-González PM, Duarte G, Ferreira MT, Fernandes MR (2021) Assessing the connectivity of riparian forests across a gradient of human disturbance: The potential of Copernicus “riparian zones” in two hydroregions. Forests 12, https://doi.org/10.3390/f12060674
Fuentes-Pérez JF, Tuhtan JA, Eckert M, Romão F, Ferreira MT, Kruusmaa M, Branco P (2018) Hydraulics of vertical slot fishways: Non-uniform profiles. Journal of Hydraulic Engineering 145(2): 06018020. https://doi.org/10.1061/(ASCE)HY.1943-0001565.
Garófano-Gómez V, Metz M, Egger G, Díaz-Redondo M, Hortobágyi B, Geerling G, Corenblit D, Steiger J (2017) Vegetation succession processes and fluvial dynamics of a mobile temperate riparian ecosystem: the lower Allier River (France). Géomorphologie: Relief, Processus, Environnement 23:187–202. https://doi.org/10.4000/geomorphologie.11805
Godinho FN, Segurado P, Franco A, Pinheiro P, Pádua J, Rivaes R, Ramos P (2019) Factors related to fish kill events in Mediterranean reservoirs. Water Research. https://doi.org/10.1016/j.watres.2019.04.027
Gomes Marques I, Faria C, Conceição SIR, Jansson R, Corcobado T, Milanovic S, Laurent Y, Bernez I, Dufour S, Mandák B, Ennouni H, Sahli A, Ater M, Dorado FJ, Caperta AD, David TS, Solla A, Rodríguez-González PM (2021) Germination and seed traits in common alder (Alnus): The potential contribution of rear-edge populations to ecological restoration success. Restoration Ecology. e13517. https://doi.org/10.1111/rec.13517
Gomes Marques I, Campelo F, Rivaes R, Albuquerque A, Ferreira MT, Rodríguez-González PM (2018) Tree rings reveal long-term changes in growth resilience in Southern European riparian forests. Dendrochronologia 52:167-176.
Gonçalves F, Carlos C, Crespo L, Zina V, Oliveira A, Salvação J, Pereira JA, Torres L (2021) Soil arthropods in the Douro Demarcated Region vineyards: General characteristics and ecosystem services provided. Sustainability 13:7837, https://doi.org/10.3390/su13147837
Hayes DS, Branco P, Santos JM, Ferreira T (2019) Oxygen depletion affects kinematics and shoaling cohesion of cyprinid fish. Water 11(4), 642. 10.3390/w11040642
Hayes DS, Brändle JM, Seliger C, Zeiringer B, Ferreira T, Schmutz S (2018) Advancing towards functional environmental flows for temperate floodplain rivers. Science of the Total Environment 633:1089–1104.
Hayes DS, Moreira M, Boavida I, Haslauer M, Unfer G, Zeiringer B, Greimel F, Auer S, Ferreira T, Schmutz S (2019) Life stage-specific hydropeaking flow rules. Sustainability 11(6), 1547. 10.3390/su11061547
Hayes DS, Lautsch E, Unfer G, Greimel F, Zeiringer B, Höller N, Schmutz S (2021) Response of European grayling, Thymallus thymallus, to multiple stressors in hydropeaking rivers. Journal of Environmental Management, 292, 112737. DOI: 1016/j.jenvman.2021.112737.
Islam ARMT, Talukdar S, Mahato S, Kundu S, Eibek KU, Pham QB, Kuriqi A, Linh NTT (2020). Flood susceptibility modelling using advanced ensemble machine learning models. Geoscience Frontiers https://doi.org/10.1016/j.gsf.2020.09.006
Kebede G, Mushi D, Linke RB, Dereje O, Lakew A, Hayes DS, Farnleitner AH, Graf W (2020). Macroinvertebrate indices versus microbial fecal pollution characteristics for water quality monitoring reveals contrasting results for an Ethiopian river. Ecological Indicators 108, 105733. DOI: 10.1016/j.ecolind.2019.105733
Kuriqi A, Pinheiro AN, Sordo-Ward A, Bejarano MD, Garrote L (2021). Ecological impacts of run-of-river hydropower plants—Current status and future prospects on the brink of energy transition. Renewable and Sustainable Energy Reviews143, 110833. https://doi.org/10.1016/j.rser.2021.110833
Kuriqi, A., Pinheiro, A. N., Sordo-Ward, A., & Garrote, L. (2020). Water-energy-ecosystem nexus: Balancing competing interests at a run-of-river hydropower plant coupling a hydrologic–ecohydraulic approach. Energy Conversion and Management 223, 113267. https://doi.org/10.1016/j.enconman.2020.113267
Kuriqi A, Ali R, Pham QB, Gambini JM, Gupta V, Malik A, Linh NTT, Joshi Y, Anh DT, Nam VT, Dong X (2020). Seasonality shift and streamflow flow variability trends in central India. Acta Geophysica 68: 1461-1475. https://doi.org/10.1007/s11600-020-00475-4
Kuriqi, A., Pinheiro, A. N., Sordo-Ward, A., & Garrote, L. (2019). Flow regime aspects in determining environmental flows and maximising energy production at run-of-river hydropower plants. Applied Energy 256, 113980. https://doi.org/10.1016/j.apenergy.2019.113980
Kuriqi A, Koçileri G, Ardiçlioğlu M (2020). Potential of Meyer-Peter and Müller approach for estimation of bed-load sediment transport under different hydraulic regimes. Modeling Earth Systems and Environment 6:129-137. https://doi.org/10.1007/s40808-019-00665-0
Kuriqi A, Pinheiro AN, Sordo-Ward A, Garrote L (2019). Influence of hydrologically based environmental flow methods on flow alteration and energy production in a run-of-river hydropower plant. Journal of Cleaner Production 232: 1028-1042. https://doi.org/10.1016/j.jclepro.2019.05.358
Kumar M, Kumari A, Kushwaha DP, Kumar P, Malik A, Ali R, Kuriqi A (2020). Estimation of daily stage–discharge relationship by using data-driven techniques of a perennial river, India. Sustainability 12(19), 7877. https://doi.org/10.3390/su12197877
Lozanovska I, Bejarano MD, Martins MJ, Nilsson C, Ferreira MT, Aguiar FC. (2020). Functional diversity of riparian woody vegetation is less affected by river regulation in the Mediterranean than boreal region. Frontiers in Plant Science 11:8
Lozanovska I, Rivaes R, Vieira C, Ferreira MT, Aguiar FC (2020). Streamflow regulation effects in the Mediterranean rivers: how far and to what extent aquatic and riparian communities are affected? Science of the Total Environment 749: 141616
Lozanovska I, Ferreira MT, Segurado P, Aguiar FC(2018) Limited resilience in hotspots of functional richness: the Mediterranean riparian shrublands. Aquatic Sciences 80:25. doi:1007/s00027-018-0576-1
Lozanovska I, Ferreira MT, Aguiar FC(2018) Functional diversity assessment in riparian forests-multiple approaches and trends: a review. Ecological Indicators 95: 781-793
Machado AI, Beretta M, Fragoso R, Duarte E (2016) Overview of the state of the art of constructed wetlands for decentralized wastewater management in Brazil. Journal of Environmental Management 187: 560-570.
Machado AI, Dordio A, Fragoso R, Leitão AE, Duarte E (2017) Furosemide removal in constructed wetlands: Comparative efficiency of LECA and cork granulates as support matrix. Journal of Environmental Management 203: 422-428.
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Machado AI, Fragoso R, Duarte E (in review) Furosemide in water matrix: HPLC-UV method development and degradation studies. Journal of Applied Science.
Malik A, Kumar A, Rai P, Kuriqi A (2021). Prediction of multi-scalar standardized precipitation index by using artificial intelligence and regression models. Climate 9(2), 28. https://doi.org/10.3390/cli9020028
Mameri D, Rivaes R, Oliveira JM, Ferreira MT, Santos JM (2020) Passability of potamodromous species through a fish lift at a large hydropower plant (Touvedo, Portugal). Sustainability 12: 172. doi.org/10.3390/su12010172
Mameri D, Branco P, Ferreira MT, Santos JM (2020) Heatwaves effects on the swimming behaviour of a Mediterranean freshwater fish, the Iberian barbel Luciobarbus bocagei. Science of the Total Environment 730: 139152.
Moreira M, Schletterer M, Quaresma A, Boavida I, Pinheiro A, (2020a). New insights into hydropeaking mitigation assessment from a diversion hydropower plant: the GKI project (Tyrol, Austria). Ecological Engineering 158, https://doi.org/10.1016/j.ecoleng.2020.106035
Moreira M, Costa MJ, Valbuena-Castro J, Pinheiro AN, Boavida I, (2020b). Cover or velocity: What triggers Iberian Barbel (Luciobarbus Bocagei) refuge selection under experimental hydropeaking conditions? Water 12(2), 317. https://doi.org/10.3390/w12020317
Moreira M, Hayes DS, Boavida I, Schletterer M, Schmutz S, Pinheiro AP (2019) Ecologically-based criteria for hydropeaking mitigation: A review. Science of the Total Environment 657: 1508-1522.
Muñoz-Mas R, Garófano-Gómez V, Andrés-Doménech I, Corenblit D, Egger G, Francés F, Ferreira MT, García-Arias A, Politti E, Rivaes R, Rodríguez-González PM, Steiger J, Vallés-Morán FJ, Martínez-Capel F (2017) Exploring the key drivers of riparian woodland successional pathways across three European river reaches. Ecohydrology doi: 10.1002/eco.1888.
Ochs K, Rivaes RP, Ferreira MT, Egger G (2018) Flow management to control excessive growth of macrophytes – an assessment based on habitat suitability modeling. Frontiers in Plant Science 9:356. doi: 10.3389/fpls.2018.00356.
Oliveira JM, Paulino JC, Segurado P, Rosado J, Rivaes R, Fernandes F, Serafim P, Ferreira MT (2019) Aquatic biodiversity and quality of streams in certified eucalypt plantations in Central Portugal. Scientia Forestalis 47(123).
Pandey K, Kumar S, Malik A, Kuriqi A (2020). Artificial neural network optimized with a genetic algorithm for seasonal groundwater table depth Prediction in Uttar Pradesh, India. Sustainability 12(21), 8932. https://doi.org/10.3390/su12218932
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Pinto R, Weigelhofer G, Pucher M, Brito AG, Hood-Nowotny R, Bonin P, Hein T (In Review). Nitrous oxide dynamics along a hydrological gradient: partitioning of processes during dry-wet cycles.
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Quaresma AL, Ferreira RML, Pinheiro AN (2017) Comparative analysis of particle image velocimetry and acoustic Doppler velocimetry in relation to a pool-type fishway flow. Journal of Hydraulic Research 55:582-591. doi:10.1080/00221686.2016.1275051
Quaresma AL, Romão F, Branco P, Ferreira MT, Pinheiro AN (2018) Multi slot versus single slot pool-type fishways: A modelling approach to compare hydrodynamics. Ecological Engineering 122:197-206. doi: 10.1016/j.ecoleng.2018.08.006
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Rivaes R, Boavida I, Santos JM, Pinheiro AN, Ferreira MT (2017) Importance of considering riparian vegetation requirements for the long-term efficiency of environmental flows in aquatic microhabitats. Hydrology and Earth System Sciences 2:5763-5780.
Rivaes R, Pinheiro AN, Egger G, Ferreira MT (2016) Using CASiMiR-vegetation model in the context of modeling riparian woods and fish species to support a holistic approach for environmental flows to be used on river management and conservation. Revista Eletrônica de Gestão e Tecnologias Ambientais 4: 1-17.
Rivaes R, Pinheiro AN, Egger G, Ferreira MT (2017) The role of river morphodynamic disturbance and groundwater hydrology as driving factors of riparian landscape patterns in Mediterranean rivers. Frontiers in Plant Science 8:1612. doi: 10.3389/fpls.2017.01612.
Rivaes R, Rodríguez-González PM, Albuquerque A, Pinheiro AN, Egger G, Ferreira MT (2015) Reducing river regulation effects on riparian vegetation using flushing flow regimes. Ecological Engineering 81: 428-438.
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Rodrigues DM, Fragoso R, Carvalho AP, Hein T, Brito AG (2019) Recovery of phosphates as struvite from urine-diverting toilets: optimization of pH, Mg:PO4 ratio and contact time to improve precipitation yield and crystal morphology. Water Science and Technology 80, 1276-1286. doi.org/10.2166/wst.2019.371
Romão F, Branco P, Quaresma AL, Amaral S, Pinheiro AN (2018) Effectiveness of a multi-slot vertical slot fishway versus a standard vertical slot fishway for potamodromous cyprinids. Hydrobiologia 816: 153-163. doi:10.1007/s10750-018-3580-5
Romão F, Quaresma AL, Branco P, Santos JM, Amaral S, Ferreira MT, Katopodis C, Pinheiro AN (2017) Passage performance of two cyprinids with different ecological traits in a fishway with distinct vertical slot configurations. Ecological Engineering 105:180-188. doi:10.1016/j.ecoleng.2017.04.031
Romão F, Quaresma AL, Santos JM, Branco P, Pinheiro AN (2019) Cyprinid passage performance in an experimental multi slot fishway across distinct seasons. Marine and Freshwater Research 70(6):881-890. doi:10.1071/MF18232
Romão F, Santos JM, Katopodis C, Pinheiro NA, Branco P (2018) How does season affect passage performance and fatigue of potamodromous cyprinids? An experimental approach in a vertical slot fishway. Water 10(4): 395. doi.org/10.3390/w10040395.
Santos JM, Rivaes R, Boavida I, Branco P (2017) Structural microhabitat use by endemic cyprinids in a Mediterranean-type river: Implications for restoration practices. Aquatic Conservation: Marine and Freshwater Ecosystems 28:25-36.
Santos JM, Rivaes R, Oliveira J, Ferreira MT (2016) Improving yellow eel upstream movements with fish lifts. Journal of Ecohydraulics 1:50-61.
Serra RQ, Calapez AR, Simões NE, Sá Marques JAA, Laranjo M, Feio MF (in press) Effects of variations in water quantity and quality in structure and functions of invertebrates’ community of a Mediterranean urban stream. Urban Ecosystems.
Suwal N, Huang X, Kuriqi A, Chen Y, Pandey KP, Bhattarai KP (2020). Optimisation of cascade reservoir operation considering environmental flows for different environmental management classes. Renewable Energy 158:453-464. https://doi.org/10.1016/j.renene.2020.05.161
Suwal N, Kuriqi A, Huang X, Delgado J, Młyński D, Walega A (2020). Environmental flows assessment in Nepal: The case of Kaligandaki River. Sustainability 12(21), 8766. https://doi.org/10.3390/su12218766.
Zina V, Ordeix M, Franco JC, Ferreira MT, Fernandes MR (2021) Ants as bioindicators of riparian ecological health in Catalonian rivers. Forests 12:625, . org/10.3390/f12050625
Zina V, Branco M, Franco JC (2020) Impact of the invasive Argentine ant in citrus agroecosystems: Effects on the diversity and frequency of native ant species foraging on tree canopy. Insects 11:785, doi: 3390/insects11110785[/vc_column_text][/vc_column][/vc_row]